IL_4V8U_214

3D structure

PDB id

4V8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CAC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CAC,GUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8U_214 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.1684

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

4V8U|1|CA|C|613
4V8U|1|CA|A|614
4V8U|1|CA|C|615
*
4V8U|1|CA|G|625
4V8U|1|CA|U|626
4V8U|1|CA|G|627

Current chains

Chain CA

16S RIBOSOMAL RNA

Nearby chains

Chain CD

30S RIBOSOMAL PROTEIN S4

Chain CP

30S RIBOSOMAL PROTEIN S16