IL_4V8U_249

3D structure

PDB id

4V8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GUC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8U_249 not in the Motif Atlas

Homologous match to IL_4V9K_064

Geometric discrepancy: 0.2286

The information below is about IL_4V9K_064

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

4V8U|1|CW|G|49
4V8U|1|CW|U|50
4V8U|1|CW|C|51
*
4V8U|1|CW|G|63
4V8U|1|CW|G|64
4V8U|1|CW|C|65

Current chains

Chain CW

RNA

Nearby chains

Chain D6

50S RIBOSOMAL PROTEIN L33

Chain DC

50S RIBOSOMAL PROTEIN L1