IL_4V8U_340

3D structure

PDB id

4V8U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 70S Ribosome with Both Cognate tRNAs in the E and P Sites Representing an Authentic Elongation Complex.

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8U_340 not in the Motif Atlas

Geometric match to IL_3U4M_002

Geometric discrepancy: 0.2636

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

4V8U|1|DA|G|2110
4V8U|1|DA|C|2111
4V8U|1|DA|G|2112
4V8U|1|DA|U|2113
4V8U|1|DA|A|2114
4V8U|1|DA|G|2115
4V8U|1|DA|G|2116
4V8U|1|DA|A|2117
4V8U|1|DA|U|2118
4V8U|1|DA|A|2119
4V8U|1|DA|G|2120
*
4V8U|1|DA|C|2178
4V8U|1|DA|C|2179

Current chains

Chain DA

23S RIBOSOMAL RNA

Nearby chains

Chain CW

Transfer RNA; tRNA

Chain DC

50S RIBOSOMAL PROTEIN L1