IL_4V8X_019

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8X_019 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.0938

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

4V8X|1|AA|G|450
4V8X|1|AA|A|451
4V8X|1|AA|A|452
4V8X|1|AA|A|453
4V8X|1|AA|C|454
4V8X|1|AA|C|455
*
4V8X|1|AA|G|476
4V8X|1|AA|A|477
4V8X|1|AA|C|479
4V8X|1|AA|U|480
4V8X|1|AA|G|481
4V8X|1|AA|A|482
4V8X|1|AA|C|483

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S RIBOSOMAL PROTEIN S16

Chain DI

50S RIBOSOMAL PROTEIN L9