IL_4V8X_034

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8X_034 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0592

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V8X|1|AA|G|887
4V8X|1|AA|G|888
4V8X|1|AA|A|889
4V8X|1|AA|G|890
4V8X|1|AA|U|891
4V8X|1|AA|A|892
4V8X|1|AA|C|893
4V8X|1|AA|G|894
*
4V8X|1|AA|U|905
4V8X|1|AA|G|906
4V8X|1|AA|A|907
4V8X|1|AA|A|908
4V8X|1|AA|A|909
4V8X|1|AA|C|910

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain AQ

30S RIBOSOMAL PROTEIN S17