IL_4V8X_052

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

AUC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8X_052 not in the Motif Atlas

Geometric match to IL_1YZ9_002

Geometric discrepancy: 0.1887

The information below is about IL_1YZ9_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

4V8X|1|AA|A|1350
4V8X|1|AA|U|1351
4V8X|1|AA|C|1352
*
4V8X|1|AA|G|1370
4V8X|1|AA|G|1371
4V8X|1|AA|U|1372

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S RIBOSOMAL PROTEIN S7

Chain AI

30S RIBOSOMAL PROTEIN S9

Chain AN

30S RIBOSOMAL PROTEIN S14 TYPE Z

Chain AU

30S RIBOSOMAL PROTEIN THX