IL_4V8X_053

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

4V8X|1|AA|C|1400, 4V8X|1|AA|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8X_053 not in the Motif Atlas

Homologous match to IL_4LFB_056

Geometric discrepancy: 0.2147

The information below is about IL_4LFB_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

4V8X|1|AA|C|1399
4V8X|1|AA|C|1400
4V8X|1|AA|G|1401
*
4V8X|1|AA|C|1501
4V8X|1|AA|A|1502
4V8X|1|AA|A|1503
4V8X|1|AA|G|1504

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain AX

5'-R(*GP*GP*CP*AP*AP*GP*GP*AP*GP*GP*UP*AP*AP*AP *AP*AP*UP*G U2M A2M A2MP*AP*AP*AP*A)-3'