IL_4V8X_179
3D structure
- PDB id
- 4V8X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Thermus thermophilus ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.35 Å
Loop
- Sequence
- GGC*GCC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary: GGC,GCC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8X_179 not in the Motif Atlas
- Geometric match to IL_4V9F_105
- Geometric discrepancy: 0.1972
- The information below is about IL_4V9F_105
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
4V8X|1|BB|G|18
4V8X|1|BB|G|19
4V8X|1|BB|C|20
*
4V8X|1|BB|G|63
4V8X|1|BB|C|64
4V8X|1|BB|C|65
Current chains
- Chain BB
- 5S ribosomal RNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: