IL_4V8X_228

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

CG*CUG

Length

5 nucleotides

Bulged bases

4V8X|1|CA|U|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8X_228 not in the Motif Atlas

Geometric match to IL_6CZR_156

Geometric discrepancy: 0.1369

The information below is about IL_6CZR_156

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

4V8X|1|CA|C|1060
4V8X|1|CA|G|1061
*
4V8X|1|CA|C|1195
4V8X|1|CA|U|1196
4V8X|1|CA|G|1197

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CC

30S RIBOSOMAL PROTEIN S3

Chain CE

30S RIBOSOMAL PROTEIN S5

Chain CI

30S RIBOSOMAL PROTEIN S9

Chain CJ

30S RIBOSOMAL PROTEIN S10

Chain CN

30S RIBOSOMAL PROTEIN S14 TYPE Z

Chain CX

BACTERIAL TOXIN YOEB

Chain CY

TOXIN OF THE YOEB-YEFM TOXIN-ANTITOXIN SYSTEM