IL_4V8X_231

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GUUGC*GGCACUC

Length

12 nucleotides

Bulged bases

4V8X|1|CA|U|1125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8X_231 not in the Motif Atlas

Geometric match to IL_4LFB_048

Geometric discrepancy: 0.2233

The information below is about IL_4LFB_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85222.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

1

Unit IDs

4V8X|1|CA|G|1124
4V8X|1|CA|U|1125
4V8X|1|CA|U|1126
4V8X|1|CA|G|1127
4V8X|1|CA|C|1128
*
4V8X|1|CA|G|1143
4V8X|1|CA|G|1144
4V8X|1|CA|C|1145
4V8X|1|CA|A|1146
4V8X|1|CA|C|1147
4V8X|1|CA|U|1148
4V8X|1|CA|C|1149

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CI

30S RIBOSOMAL PROTEIN S9

Chain CJ

30S RIBOSOMAL PROTEIN S10