IL_4V8X_333

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GCC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCC,GGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8X_333 not in the Motif Atlas

Geometric match to IL_7MLW_001

Geometric discrepancy: 0.2491

The information below is about IL_7MLW_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V8X|1|DA|G|2127
4V8X|1|DA|C|2128
4V8X|1|DA|C|2129
*
4V8X|1|DA|G|2159
4V8X|1|DA|G|2160
4V8X|1|DA|C|2161

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DC

50S RIBOSOMAL PROTEIN L1