IL_4V8X_349

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GAA*UUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GAA,UUC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8X_349 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.1538

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4V8X|1|DA|G|2588
4V8X|1|DA|A|2589
4V8X|1|DA|A|2590
*
4V8X|1|DA|U|2604
4V8X|1|DA|U|2605
4V8X|1|DA|C|2606

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DD

50S RIBOSOMAL PROTEIN L2