IL_4V8X_354

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UUUCC*GGUAG

Length

10 nucleotides

Bulged bases

4V8X|1|DA|U|2689

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8X_354 not in the Motif Atlas

Homologous match to IL_9DFE_104

Geometric discrepancy: 0.1244

The information below is about IL_9DFE_104

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

4V8X|1|DA|U|2687
4V8X|1|DA|U|2688
4V8X|1|DA|U|2689
4V8X|1|DA|C|2690
4V8X|1|DA|C|2691
*
4V8X|1|DA|G|2718
4V8X|1|DA|G|2719
4V8X|1|DA|U|2720
4V8X|1|DA|A|2721
4V8X|1|DA|G|2722

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DE

50S RIBOSOMAL PROTEIN L3

Chain DR

50S RIBOSOMAL PROTEIN L17

Chain DT

50S RIBOSOMAL PROTEIN L19