IL_4V8X_390

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GUCGC*GCGCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8X_390 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3396

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

4V8X|1|CA|G|1435
4V8X|1|CA|U|1436
4V8X|1|CA|C|1437
4V8X|1|CA|G|1438
4V8X|1|CA|C|1439
*
4V8X|1|CA|G|1462
4V8X|1|CA|C|1463
4V8X|1|CA|G|1464
4V8X|1|CA|C|1465
4V8X|1|CA|C|1466

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CT

30S RIBOSOMAL PROTEIN S20

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DT

50S RIBOSOMAL PROTEIN L19