IL_4V8X_391

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GUCGG*CCGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8X_391 not in the Motif Atlas

Geometric match to IL_8VM9_004

Geometric discrepancy: 0.3247

The information below is about IL_8VM9_004

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

4V8X|1|CW|G|49
4V8X|1|CW|U|50
4V8X|1|CW|C|51
4V8X|1|CW|G|52
4V8X|1|CW|G|53
*
4V8X|1|CW|C|61
4V8X|1|CW|C|62
4V8X|1|CW|G|63
4V8X|1|CW|G|64
4V8X|1|CW|C|65

Current chains

Chain CW

transfer RNA

Nearby chains

Chain DC

50S RIBOSOMAL PROTEIN L1