IL_4V8X_396

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

UAG*CA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8X_396 not in the Motif Atlas

Homologous match to IL_9DFE_031

Geometric discrepancy: 0.2592

The information below is about IL_9DFE_031

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

4V8X|1|DA|U|877
4V8X|1|DA|A|878
4V8X|1|DA|G|879
*
4V8X|1|DA|C|898
4V8X|1|DA|A|899

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DQ

50S RIBOSOMAL PROTEIN L16

Chain DZ

50S RIBOSOMAL PROTEIN L25