IL_4V8X_404

3D structure

PDB id

4V8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Thermus thermophilus ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.35 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

4V8X|1|AA|A|1227

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8X_404 not in the Motif Atlas

Homologous match to IL_4LFB_038

Geometric discrepancy: 0.3103

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

4V8X|1|AA|G|953
4V8X|1|AA|G|954
*
4V8X|1|AA|C|1226
4V8X|1|AA|A|1227
4V8X|1|AA|C|1228

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AM

30S RIBOSOMAL PROTEIN S13

Chain AS

30S RIBOSOMAL PROTEIN S19

Chain AV

Transfer RNA; tRNA

Chain AY

TOXIN OF THE YOEB-YEFM TOXIN-ANTITOXIN SYSTEM