IL_4V8Y_003
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- UCAAA*UGACAA
- Length
- 11 nucleotides
- Bulged bases
- 4V8Y|1|B2|A|468
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Y_003 not in the Motif Atlas
- Geometric match to IL_4V88_386
- Geometric discrepancy: 0.0618
- The information below is about IL_4V88_386
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_37842.2
- Basepair signature
- cWW-cWW-L-R-cWW-cWW-R-L
- Number of instances in this motif group
- 4
Unit IDs
4V8Y|1|B2|U|37
4V8Y|1|B2|C|38
4V8Y|1|B2|A|39
4V8Y|1|B2|A|40
4V8Y|1|B2|A|41
*
4V8Y|1|B2|U|466
4V8Y|1|B2|G|467
4V8Y|1|B2|A|468
4V8Y|1|B2|C|469
4V8Y|1|B2|A|470
4V8Y|1|B2|A|471
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AE
- 40S RIBOSOMAL PROTEIN S4-A
- Chain AJ
- 40S RIBOSOMAL PROTEIN S9-A
- Chain AY
- 40S RIBOSOMAL PROTEIN S24-A
- Chain CP
- EUKARYOTIC TRANSLATION INITIATION FACTOR 5B
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