IL_4V8Y_004
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GAUUAAG*CGC
- Length
- 10 nucleotides
- Bulged bases
- 4V8Y|1|B2|A|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Y_004 not in the Motif Atlas
- Homologous match to IL_4V88_387
- Geometric discrepancy: 0.0543
- The information below is about IL_4V88_387
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_77761.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
4V8Y|1|B2|G|42
4V8Y|1|B2|A|43
4V8Y|1|B2|U|44
4V8Y|1|B2|U|45
4V8Y|1|B2|A|46
4V8Y|1|B2|A|47
4V8Y|1|B2|G|48
*
4V8Y|1|B2|C|431
4V8Y|1|B2|G|432
4V8Y|1|B2|C|433
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AX
- 40S RIBOSOMAL PROTEIN S23-A
- Chain CP
- EUKARYOTIC TRANSLATION INITIATION FACTOR 5B
Coloring options: