IL_4V8Y_011
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GUAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 4V8Y|1|B2|U|170
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Y_011 not in the Motif Atlas
- Homologous match to IL_4V88_394
- Geometric discrepancy: 0.0912
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V8Y|1|B2|G|143
4V8Y|1|B2|U|144
4V8Y|1|B2|A|145
4V8Y|1|B2|U|146
4V8Y|1|B2|A|147
4V8Y|1|B2|A|148
4V8Y|1|B2|C|149
*
4V8Y|1|B2|G|165
4V8Y|1|B2|C|166
4V8Y|1|B2|U|167
4V8Y|1|B2|A|168
4V8Y|1|B2|A|169
4V8Y|1|B2|U|170
4V8Y|1|B2|A|171
4V8Y|1|B2|C|172
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AG
- 40S RIBOSOMAL PROTEIN S6-A
- Chain AY
- 40S RIBOSOMAL PROTEIN S24-A
- Chain BW
- 60S RIBOSOMAL PROTEIN L24-A
Coloring options: