IL_4V8Y_024

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Y_024 not in the Motif Atlas

Homologous match to IL_4V88_406

Geometric discrepancy: 0.1709

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

4V8Y|1|B2|C|411
4V8Y|1|B2|A|412
4V8Y|1|B2|U|413
*
4V8Y|1|B2|A|420
4V8Y|1|B2|A|421
4V8Y|1|B2|G|422

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AG

40S RIBOSOMAL PROTEIN S6-A

Chain BV

60S RIBOSOMAL PROTEIN L23-A

Chain CP

EUKARYOTIC TRANSLATION INITIATION FACTOR 5B