IL_4V8Y_028

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UACA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Y_028 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.2368

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

4V8Y|1|B2|U|517
4V8Y|1|B2|A|518
4V8Y|1|B2|C|519
4V8Y|1|B2|A|520
*
4V8Y|1|B2|U|532
4V8Y|1|B2|U|533
4V8Y|1|B2|A|534
4V8Y|1|B2|A|535

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AJ

40S RIBOSOMAL PROTEIN S9-A

Chain AY

40S RIBOSOMAL PROTEIN S24-A