IL_4V8Y_055
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Y_055 not in the Motif Atlas
- Homologous match to IL_4V88_440
- Geometric discrepancy: 0.0568
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
4V8Y|1|B2|G|1111
4V8Y|1|B2|G|1112
4V8Y|1|B2|A|1113
4V8Y|1|B2|G|1114
4V8Y|1|B2|U|1115
4V8Y|1|B2|A|1116
4V8Y|1|B2|U|1117
4V8Y|1|B2|G|1118
*
4V8Y|1|B2|U|1129
4V8Y|1|B2|G|1130
4V8Y|1|B2|A|1131
4V8Y|1|B2|A|1132
4V8Y|1|B2|A|1133
4V8Y|1|B2|C|1134
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AX
- 40S RIBOSOMAL PROTEIN S23-A
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Bn
- 60S RIBOSOMAL PROTEIN L41-B
Coloring options: