IL_4V8Y_074
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Y_074 not in the Motif Atlas
- Homologous match to IL_4V88_459
- Geometric discrepancy: 0.0955
- The information below is about IL_4V88_459
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10447.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V8Y|1|B2|G|1480
4V8Y|1|B2|C|1481
4V8Y|1|B2|C|1482
4V8Y|1|B2|A|1483
4V8Y|1|B2|G|1484
4V8Y|1|B2|C|1485
4V8Y|1|B2|G|1486
4V8Y|1|B2|A|1487
*
4V8Y|1|B2|U|1519
4V8Y|1|B2|U|1520
4V8Y|1|B2|G|1521
4V8Y|1|B2|U|1522
4V8Y|1|B2|G|1523
4V8Y|1|B2|A|1524
4V8Y|1|B2|A|1525
4V8Y|1|B2|A|1526
4V8Y|1|B2|C|1527
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A3
- 40S RIBOSOMAL PROTEIN S29-A
- Chain AD
- 40S RIBOSOMAL PROTEIN S3
- Chain AF
- 40S RIBOSOMAL PROTEIN S5
- Chain AQ
- 40S RIBOSOMAL PROTEIN S16-A
- Chain AT
- 40S RIBOSOMAL PROTEIN S19-A
- Chain AU
- 40S RIBOSOMAL PROTEIN S20
Coloring options: