IL_4V8Y_076

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Y_076 not in the Motif Atlas

Homologous match to IL_4V88_461

Geometric discrepancy: 0.1008

The information below is about IL_4V88_461

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4V8Y|1|B2|C|1495
4V8Y|1|B2|U|1496
4V8Y|1|B2|U|1497
4V8Y|1|B2|G|1498
*
4V8Y|1|B2|C|1509
4V8Y|1|B2|U|1510
4V8Y|1|B2|U|1511
4V8Y|1|B2|G|1512

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AT

40S RIBOSOMAL PROTEIN S19-A