IL_4V8Y_079

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Y_079 not in the Motif Atlas

Homologous match to IL_4V88_464

Geometric discrepancy: 0.0894

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V8Y|1|B2|G|1638
4V8Y|1|B2|C|1639
4V8Y|1|B2|C|1640
4V8Y|1|B2|C|1641
*
4V8Y|1|B2|G|1760
4V8Y|1|B2|U|1761
4V8Y|1|B2|A|1762
4V8Y|1|B2|A|1763
4V8Y|1|B2|C|1764

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain A7

SUPPRESSOR PROTEIN STM1

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain Bn

60S RIBOSOMAL PROTEIN L41-B