IL_4V8Y_086

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UGAG*CAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Y_086 not in the Motif Atlas

Homologous match to IL_4V88_471

Geometric discrepancy: 0.0665

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

4V8Y|1|B2|U|1669
4V8Y|1|B2|G|1670
4V8Y|1|B2|A|1671
4V8Y|1|B2|G|1672
*
4V8Y|1|B2|C|1729
4V8Y|1|B2|A|1730
4V8Y|1|B2|A|1731
4V8Y|1|B2|A|1732

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AG

40S RIBOSOMAL PROTEIN S6-A

Chain AI

40S RIBOSOMAL PROTEIN S8-A

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain BV

60S RIBOSOMAL PROTEIN L23-A

Chain BW

60S RIBOSOMAL PROTEIN L24-A