IL_4V8Y_088
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CUCA*UUUG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Y_088 not in the Motif Atlas
- Homologous match to IL_4V88_473
- Geometric discrepancy: 0.0672
- The information below is about IL_4V88_473
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
4V8Y|1|B2|C|1675
4V8Y|1|B2|U|1676
4V8Y|1|B2|C|1677
4V8Y|1|B2|A|1678
*
4V8Y|1|B2|U|1723
4V8Y|1|B2|U|1724
4V8Y|1|B2|U|1725
4V8Y|1|B2|G|1726
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AG
- 40S RIBOSOMAL PROTEIN S6-A
- Chain AI
- 40S RIBOSOMAL PROTEIN S8-A
- Chain BW
- 60S RIBOSOMAL PROTEIN L24-A
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