IL_4V8Y_139

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGUC*GACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGUC,GACC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Y_139 not in the Motif Atlas

Geometric match to IL_4K27_001

Geometric discrepancy: 0.2378

The information below is about IL_4K27_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4V8Y|1|B5|G|1020
4V8Y|1|B5|G|1021
4V8Y|1|B5|U|1022
4V8Y|1|B5|C|1023
*
4V8Y|1|B5|G|1029
4V8Y|1|B5|A|1030
4V8Y|1|B5|C|1031
4V8Y|1|B5|C|1032

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain A7

SUPPRESSOR PROTEIN STM1

Chain AP

40S RIBOSOMAL PROTEIN S15

Chain BJ

60S RIBOSOMAL PROTEIN L11-A