IL_4V8Y_148
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GACACCACAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 4V8Y|1|B5|C|1196, 4V8Y|1|B5|A|1302, 4V8Y|1|B5|U|1305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Y_148 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.0388
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
4V8Y|1|B5|G|1194
4V8Y|1|B5|A|1195
4V8Y|1|B5|C|1196
4V8Y|1|B5|A|1197
4V8Y|1|B5|C|1198
4V8Y|1|B5|C|1199
4V8Y|1|B5|A|1200
4V8Y|1|B5|C|1201
4V8Y|1|B5|A|1202
4V8Y|1|B5|A|1203
4V8Y|1|B5|A|1204
4V8Y|1|B5|A|1205
*
4V8Y|1|B5|U|1299
4V8Y|1|B5|G|1300
4V8Y|1|B5|A|1301
4V8Y|1|B5|A|1302
4V8Y|1|B5|A|1303
4V8Y|1|B5|A|1304
4V8Y|1|B5|U|1305
4V8Y|1|B5|G|1306
4V8Y|1|B5|G|1307
4V8Y|1|B5|A|1308
4V8Y|1|B5|U|1309
4V8Y|1|B5|G|1310
4V8Y|1|B5|G|1311
4V8Y|1|B5|C|1312
4V8Y|1|B5|G|1313
4V8Y|1|B5|C|1314
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain B7
- 5S ribosomal RNA; 5S rRNA
- Chain BB
- 60S RIBOSOMAL PROTEIN L3
- Chain BF
- 60S RIBOSOMAL PROTEIN L7-A
- Chain BI
- 60S RIBOSOMAL PROTEIN L10
- Chain BO
- 60S RIBOSOMAL PROTEIN L16-A
- Chain Bf
- 60S RIBOSOMAL PROTEIN L33-A
- Chain Bm
- UBIQUITIN-60S RIBOSOMAL PROTEIN L40
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