IL_4V8Y_156
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GGUU*AC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Y_156 not in the Motif Atlas
- Geometric match to IL_4V9F_050
- Geometric discrepancy: 0.0612
- The information below is about IL_4V9F_050
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_74641.2
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 33
Unit IDs
4V8Y|1|B5|G|1492
4V8Y|1|B5|G|1493
4V8Y|1|B5|U|1494
4V8Y|1|B5|U|1495
*
4V8Y|1|B5|A|1835
4V8Y|1|B5|C|1836
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain BX
- 60S RIBOSOMAL PROTEIN L25
- Chain Bg
- 60S RIBOSOMAL PROTEIN L34-A
- Chain Bj
- 60S RIBOSOMAL PROTEIN L37-A
- Chain Bl
- 60S RIBOSOMAL PROTEIN L39
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