IL_4V8Y_168

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UUAAC*GGAAGA

Length

11 nucleotides

Bulged bases

4V8Y|1|B5|G|1751

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Y_168 not in the Motif Atlas

Homologous match to IL_5TBW_071

Geometric discrepancy: 0.0729

The information below is about IL_5TBW_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69313.1

Basepair signature

cWW-tWH-tHH-tHS-cWW

Number of instances in this motif group

2

Unit IDs

4V8Y|1|B5|U|1694
4V8Y|1|B5|U|1695
4V8Y|1|B5|A|1696
4V8Y|1|B5|A|1697
4V8Y|1|B5|C|1698
*
4V8Y|1|B5|G|1747
4V8Y|1|B5|G|1748
4V8Y|1|B5|A|1749
4V8Y|1|B5|A|1750
4V8Y|1|B5|G|1751
4V8Y|1|B5|A|1752

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain Bg

60S RIBOSOMAL PROTEIN L34-A

Chain Bk

60S RIBOSOMAL PROTEIN L38