IL_4V8Y_179

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

4V8Y|1|B5|U|2159, 4V8Y|1|B5|U|2175, 4V8Y|1|B5|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Y_179 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0444

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

4V8Y|1|B5|C|2156
4V8Y|1|B5|G|2157
4V8Y|1|B5|A|2158
4V8Y|1|B5|U|2159
4V8Y|1|B5|G|2160
4V8Y|1|B5|G|2161
*
4V8Y|1|B5|U|2173
4V8Y|1|B5|G|2174
4V8Y|1|B5|U|2175
4V8Y|1|B5|U|2176
4V8Y|1|B5|G|2177
4V8Y|1|B5|A|2178
4V8Y|1|B5|C|2179
4V8Y|1|B5|G|2180

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain BA

60S RIBOSOMAL PROTEIN L2-B