IL_4V8Y_203

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

4V8Y|1|B5|G|2945, 4V8Y|1|B5|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Y_203 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.0882

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V8Y|1|B5|C|2879
4V8Y|1|B5|U|2880
4V8Y|1|B5|C|2881
*
4V8Y|1|B5|G|2943
4V8Y|1|B5|U|2944
4V8Y|1|B5|G|2945
4V8Y|1|B5|A|2946
4V8Y|1|B5|G|2947

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BB

60S RIBOSOMAL PROTEIN L3

Chain BV

60S RIBOSOMAL PROTEIN L23-A