IL_4V8Y_231

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CC*GUUG

Length

6 nucleotides

Bulged bases

4V8Y|1|B5|U|3354, 4V8Y|1|B5|U|3355

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Y_231 not in the Motif Atlas

Homologous match to IL_8C3A_142

Geometric discrepancy: 0.1975

The information below is about IL_8C3A_142

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

4V8Y|1|B5|C|3349
4V8Y|1|B5|C|3350
*
4V8Y|1|B5|G|3353
4V8Y|1|B5|U|3354
4V8Y|1|B5|U|3355
4V8Y|1|B5|G|3356

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain AI

40S RIBOSOMAL PROTEIN S8-A