IL_4V8Y_232

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CU*AAG

Length

5 nucleotides

Bulged bases

4V8Y|1|B7|A|64

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Y_232 not in the Motif Atlas

Homologous match to IL_5TBW_372

Geometric discrepancy: 0.0633

The information below is about IL_5TBW_372

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

4V8Y|1|B7|C|15
4V8Y|1|B7|U|16
*
4V8Y|1|B7|A|63
4V8Y|1|B7|A|64
4V8Y|1|B7|G|65

Current chains

Chain B7

5S RIBOSOMAL RNA

Nearby chains

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain BD

60S RIBOSOMAL PROTEIN L5

Chain BI

60S RIBOSOMAL PROTEIN L10

Chain BJ

60S RIBOSOMAL PROTEIN L11-A