IL_4V8Y_245
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GGAG*CGCCGGUGAAAUAC
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Y_245 not in the Motif Atlas
- Geometric match to IL_3U4M_003
- Geometric discrepancy: 0.2148
- The information below is about IL_3U4M_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_75283.2
- Basepair signature
- cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R
- Number of instances in this motif group
- 3
Unit IDs
4V8Y|1|CN|G|2145
4V8Y|1|CN|G|2146
4V8Y|1|CN|A|2147
4V8Y|1|CN|G|2148
*
4V8Y|1|CN|C|2182
4V8Y|1|CN|G|2183
4V8Y|1|CN|C|2184
4V8Y|1|CN|C|2185
4V8Y|1|CN|G|2186
4V8Y|1|CN|G|2187
4V8Y|1|CN|U|2188
4V8Y|1|CN|G|2189
4V8Y|1|CN|A|2190
4V8Y|1|CN|A|2191
4V8Y|1|CN|A|2192
4V8Y|1|CN|U|2193
4V8Y|1|CN|A|2194
4V8Y|1|CN|C|2195
Current chains
- Chain CN
- EUKARYOTIC RIBOSOMAL L1_RRNA
Nearby chains
- Chain By
- 50S RIBOSOMAL PROTEIN L1
- Chain CL
- 50S RIBOSOMAL PROTEIN L1
- Chain CW
- Transfer RNA; tRNA
Coloring options: