IL_4V8Y_257

3D structure

PDB id

4V8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

4V8Y|1|B5|U|1820, 4V8Y|1|B5|U|1821

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Y_257 not in the Motif Atlas

Homologous match to IL_8P9A_293

Geometric discrepancy: 0.2264

The information below is about IL_8P9A_293

Detailed Annotation

Major groove platform related

Broad Annotation

Major groove platform related

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

4V8Y|1|B5|G|1623
4V8Y|1|B5|G|1624
*
4V8Y|1|B5|U|1819
4V8Y|1|B5|U|1820
4V8Y|1|B5|U|1821
4V8Y|1|B5|C|1822

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain Bg

60S RIBOSOMAL PROTEIN L34-A