IL_4V8Z_025
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- UUA*UA
- Length
- 5 nucleotides
- Bulged bases
- 4V8Z|1|B2|U|440
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_025 not in the Motif Atlas
- Homologous match to IL_4V88_407
- Geometric discrepancy: 0.0789
- The information below is about IL_4V88_407
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_83039.19
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 123
Unit IDs
4V8Z|1|B2|U|439
4V8Z|1|B2|U|440
4V8Z|1|B2|A|441
*
4V8Z|1|B2|U|463
4V8Z|1|B2|A|464
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AE
- 40S RIBOSOMAL PROTEIN S4-A
- Chain AJ
- 40S RIBOSOMAL PROTEIN S9-A
- Chain AY
- 40S RIBOSOMAL PROTEIN S24-A
- Chain CV
- EUKARYOTIC TRANSLATION INITIATION FACTOR 5B, PROBABLE TRANSLATION INITIATION FACTOR IF-2
Coloring options: