IL_4V8Z_037

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GCCGGUC*GGAUUUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Z|1|B2|G|652
4V8Z|1|B2|C|653
4V8Z|1|B2|C|654
4V8Z|1|B2|G|655
4V8Z|1|B2|G|656
4V8Z|1|B2|U|657
4V8Z|1|B2|C|658
*
4V8Z|1|B2|G|676
4V8Z|1|B2|G|677
4V8Z|1|B2|A|678
4V8Z|1|B2|U|679
4V8Z|1|B2|U|680
4V8Z|1|B2|U|681
4V8Z|1|B2|C|682

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AE

40S RIBOSOMAL PROTEIN S4-A

Chain AJ

40S RIBOSOMAL PROTEIN S9-A