IL_4V8Z_041

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GAAAAAAUUA*UAUAUUAGC

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V8Z|1|B2|G|751
4V8Z|1|B2|A|752
4V8Z|1|B2|A|753
4V8Z|1|B2|A|754
4V8Z|1|B2|A|755
4V8Z|1|B2|A|756
4V8Z|1|B2|A|757
4V8Z|1|B2|U|758
4V8Z|1|B2|U|759
4V8Z|1|B2|A|760
*
4V8Z|1|B2|U|790
4V8Z|1|B2|A|791
4V8Z|1|B2|U|792
4V8Z|1|B2|A|793
4V8Z|1|B2|U|794
4V8Z|1|B2|U|795
4V8Z|1|B2|A|796
4V8Z|1|B2|G|797
4V8Z|1|B2|C|798

Current chains

Chain B2

18S RIBOSOMAL RNA

Nearby chains

Chain AE

40S RIBOSOMAL PROTEIN S4-A

Chain AJ

40S RIBOSOMAL PROTEIN S9-A

Chain AL

40S RIBOSOMAL PROTEIN S11-A

Chain AW

40S RIBOSOMAL PROTEIN S22-A