IL_4V8Z_049
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 4V8Z|1|B2|G|913
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_049 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.3633
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
4V8Z|1|B2|U|893
4V8Z|1|B2|U|894
4V8Z|1|B2|G|895
4V8Z|1|B2|U|896
4V8Z|1|B2|C|897
4V8Z|1|B2|A|898
4V8Z|1|B2|G|899
*
4V8Z|1|B2|C|910
4V8Z|1|B2|U|911
4V8Z|1|B2|U|912
4V8Z|1|B2|G|913
4V8Z|1|B2|G|914
4V8Z|1|B2|A|915
4V8Z|1|B2|U|916
4V8Z|1|B2|U|917
4V8Z|1|B2|U|918
4V8Z|1|B2|A|919
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain AB
- 40S RIBOSOMAL PROTEIN S1-A
- Chain AO
- 40S RIBOSOMAL PROTEIN S14-A
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: