IL_4V8Z_070
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- CUAC*GAG
- Length
- 7 nucleotides
- Bulged bases
- 4V8Z|1|B2|U|1340
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_070 not in the Motif Atlas
- Homologous match to IL_4V88_455
- Geometric discrepancy: 0.0969
- The information below is about IL_4V88_455
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
4V8Z|1|B2|C|1339
4V8Z|1|B2|U|1340
4V8Z|1|B2|A|1341
4V8Z|1|B2|C|1342
*
4V8Z|1|B2|G|1383
4V8Z|1|B2|A|1384
4V8Z|1|B2|G|1385
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A6
- GUANINE NUCLEOTIDE-BINDING PROTEIN SUBUNIT BETA-LIKE PROTEIN
- Chain AQ
- 40S RIBOSOMAL PROTEIN S16-A
- Chain AR
- 40S RIBOSOMAL PROTEIN S17-A
- Chain AU
- 40S RIBOSOMAL PROTEIN S20
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