IL_4V8Z_075
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- GUCUAAC*GUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 4V8Z|1|B2|A|1516, 4V8Z|1|B2|U|1517
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_075 not in the Motif Atlas
- Homologous match to IL_4V88_460
- Geometric discrepancy: 0.0921
- The information below is about IL_4V88_460
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_77092.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
4V8Z|1|B2|G|1488
4V8Z|1|B2|U|1489
4V8Z|1|B2|C|1490
4V8Z|1|B2|U|1491
4V8Z|1|B2|A|1492
4V8Z|1|B2|A|1493
4V8Z|1|B2|C|1494
*
4V8Z|1|B2|G|1513
4V8Z|1|B2|U|1514
4V8Z|1|B2|A|1515
4V8Z|1|B2|A|1516
4V8Z|1|B2|U|1517
4V8Z|1|B2|C|1518
Current chains
- Chain B2
- 18S RIBOSOMAL RNA
Nearby chains
- Chain A3
- 40S RIBOSOMAL PROTEIN S29-A
- Chain AD
- 40S RIBOSOMAL PROTEIN S3
- Chain AU
- 40S RIBOSOMAL PROTEIN S20
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