IL_4V8Z_094

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

4V8Z|1|B5|U|14

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_094 not in the Motif Atlas

Homologous match to IL_8C3A_003

Geometric discrepancy: 0.1046

The information below is about IL_8C3A_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

4V8Z|1|B5|A|13
4V8Z|1|B5|U|14
4V8Z|1|B5|C|15
*
4V8Z|1|B8|G|144
4V8Z|1|B8|U|145

Current chains

Chain B5

25S RIBOSOMAL RNA

Chain B8

5.8S RIBOSOMAL RNA

Nearby chains

Chain BG

60S RIBOSOMAL PROTEIN L8-A

Chain BN

60S RIBOSOMAL PROTEIN L15-A

Chain BX

60S RIBOSOMAL PROTEIN L25