IL_4V8Z_096
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 4V8Z|1|B5|A|49
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_096 not in the Motif Atlas
- Homologous match to IL_5TBW_005
- Geometric discrepancy: 0.0326
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V8Z|1|B5|C|31
4V8Z|1|B5|U|32
4V8Z|1|B5|G|33
4V8Z|1|B5|A|34
4V8Z|1|B5|A|35
4V8Z|1|B5|C|36
4V8Z|1|B5|U|37
4V8Z|1|B5|U|38
*
4V8Z|1|B5|A|45
4V8Z|1|B5|U|46
4V8Z|1|B5|C|47
4V8Z|1|B5|A|48
4V8Z|1|B5|A|49
4V8Z|1|B5|U|50
4V8Z|1|B5|A|51
4V8Z|1|B5|A|52
4V8Z|1|B5|G|53
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain BL
- 60S RIBOSOMAL PROTEIN L13-A
- Chain BN
- 60S RIBOSOMAL PROTEIN L15-A
- Chain Ba
- 60S RIBOSOMAL PROTEIN L28
- Chain Bj
- 60S RIBOSOMAL PROTEIN L37-A
- Chain Bo
- 60S RIBOSOMAL PROTEIN L42-A
Coloring options: