IL_4V8Z_100

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CAA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_100 not in the Motif Atlas

Homologous match to IL_5TBW_009

Geometric discrepancy: 0.1416

The information below is about IL_5TBW_009

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

4V8Z|1|B5|C|163
4V8Z|1|B5|A|164
4V8Z|1|B5|A|165
*
4V8Z|1|B5|U|257
4V8Z|1|B5|G|258

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BL

60S RIBOSOMAL PROTEIN L13-A

Chain Bh

60S RIBOSOMAL PROTEIN L35-B