IL_4V8Z_111
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- GGAUAAAUC*GGAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 4V8Z|1|B5|A|519
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_111 not in the Motif Atlas
- Homologous match to IL_5TBW_019
- Geometric discrepancy: 0.0495
- The information below is about IL_5TBW_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74024.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
4V8Z|1|B5|G|517
4V8Z|1|B5|G|518
4V8Z|1|B5|A|519
4V8Z|1|B5|U|520
4V8Z|1|B5|A|521
4V8Z|1|B5|A|522
4V8Z|1|B5|A|523
4V8Z|1|B5|U|524
4V8Z|1|B5|C|525
*
4V8Z|1|B5|G|567
4V8Z|1|B5|G|568
4V8Z|1|B5|A|569
4V8Z|1|B5|A|570
4V8Z|1|B5|U|571
4V8Z|1|B5|A|572
4V8Z|1|B5|C|573
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain BC
- 60S RIBOSOMAL PROTEIN L4-A
- Chain BF
- 60S RIBOSOMAL PROTEIN L7-A
- Chain BM
- 60S RIBOSOMAL PROTEIN L14-B
- Chain BS
- 60S RIBOSOMAL PROTEIN L20-B
Coloring options: