IL_4V8Z_118

3D structure

PDB id

4V8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CUGAUG*CGGAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V8Z_118 not in the Motif Atlas

Homologous match to IL_5TBW_026

Geometric discrepancy: 0.0642

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V8Z|1|B5|C|758
4V8Z|1|B5|U|759
4V8Z|1|B5|G|760
4V8Z|1|B5|A|761
4V8Z|1|B5|U|762
4V8Z|1|B5|G|763
*
4V8Z|1|B5|C|768
4V8Z|1|B5|G|769
4V8Z|1|B5|G|770
4V8Z|1|B5|A|771
4V8Z|1|B5|U|772
4V8Z|1|B5|G|773

Current chains

Chain B5

25S RIBOSOMAL RNA

Nearby chains

Chain BL

60S RIBOSOMAL PROTEIN L13-A

Chain Ba

60S RIBOSOMAL PROTEIN L28

Chain Bo

60S RIBOSOMAL PROTEIN L42-A