IL_4V8Z_127
3D structure
- PDB id
- 4V8Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.6 Å
Loop
- Sequence
- UUU*AUA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V8Z_127 not in the Motif Atlas
- Homologous match to IL_5TBW_034
- Geometric discrepancy: 0.0534
- The information below is about IL_5TBW_034
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
4V8Z|1|B5|U|954
4V8Z|1|B5|U|955
4V8Z|1|B5|U|956
*
4V8Z|1|B5|A|965
4V8Z|1|B5|U|966
4V8Z|1|B5|A|967
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain BL
- 60S RIBOSOMAL PROTEIN L13-A
- Chain BQ
- 60S RIBOSOMAL PROTEIN L18-A
- Chain BT
- 60S RIBOSOMAL PROTEIN L21-A
- Chain Ba
- 60S RIBOSOMAL PROTEIN L28
- Chain Bb
- 60S RIBOSOMAL PROTEIN L29
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